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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
69
total RNA-seq
51
ChIP-seq
36
DNase-seq
14
ATAC-seq
4
Hi-C
2
pCHi-C
1
WGBS
Assay category
69
Transcription
51
DNA binding
50
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
53
histone
53
histone modification
34
broad histone mark
narrow histone mark
17
control
Date released
150
February, 2021
56
October, 2019
32
June, 2019
8
February, 2023
5
July, 2019
5
May, 2019
3
February, 2020
1
March, 2020
1
May, 2021
Available data
160
bam
135
bigWig
88
txt
80
bed narrowPeak
70
bigBed narrowPeak
66
tsv
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
261
Homo sapiens
Biosample type
260
tissue
1
primary cell
Organ
873
pancreas
731
liver
651
connective tissue
479
adipose tissue
475
epithelium
353
heart
339
kidney
210
vasculature
205
blood vessel
169
brain
159
bone element
135
artery
107
limb
83
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
260
AMP
1
T1D
Genome assembly (visualization)
146
hg19
143
GRCh38
Lab
260
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
85
inconsistent ontology term
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
261 results
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RNA microarray
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
pCHi-C
WGBS
tissue
bone element
84
bone tissue
58
tibial nerve
5
27
2
1
tibial artery
1
19
2
1
muscle of leg
5
13
1
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primary cell
megakaryocyte
1
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