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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
5
DNase-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
Assay category
6
DNA binding
5
DNA accessibility
3
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
control
3
RNA binding protein
3
histone
3
histone modification
narrow histone mark
3
transcription factor
Date released
7
July, 2019
6
November, 2017
5
June, 2019
Available data
17
bigWig
14
bam
8
bed bed3+
8
bed broadPeak
8
bed narrowPeak
8
bigBed broadPeak
8
bigBed narrowPeak
6
fastq
3
hdf5
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
18
Homo sapiens
Biosample type
tissue
18
primary cell
Organ
460
epithelium
414
liver
400
pancreas
117
connective tissue
95
vasculature
90
blood vessel
78
heart
68
artery
68
blood
68
bodily fluid
50
kidney
29
embryo
18
brain
16
vein
10
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
0
ovary
Project
18
AMP
Genome assembly (visualization)
18
hg19
11
GRCh38
Lab
18
AMP-T2D consortium
target.investigated_as!
narrow histone mark
biosample_type!
tissue
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
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