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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
1
single cell RNA-seq
Assay category
64
DNA binding
10
DNA accessibility
7
DNA methylation
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
control
3
other context
3
other post-translational modification
Date released
712
February, 2021
326
May, 2021
297
November, 2017
296
August, 2021
291
May, 2020
273
August, 2017
205
February, 2023
200
May, 2022
199
June, 2019
168
July, 2018
134
October, 2019
105
July, 2019
82
November, 2018
63
May, 2019
61
March, 2020
59
September, 2020
58
September, 2018
57
December, 2017
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
36
October, 2018
31
December, 2018
25
February, 2020
23
February, 2018
23
January, 2019
19
April, 2020
18
October, 2017
16
January, 2021
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
82
fastq
81
bam
80
bigWig
73
bed narrowPeak
73
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
82
Homo sapiens
Biosample type
58
cell line
23
tissue
1
primary cell
Organ
53
liver
12
blood
12
bodily fluid
7
pancreas
6
spleen
2
brain
1
adipose tissue
1
connective tissue
Project
82
AMP
Genome assembly (visualization)
79
GRCh38
71
hg19
Lab
82
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
narrow histone mark
control
BIOSAMPLE
ASSAY
82 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
1
GM12878
12
tissue
liver
4
2
spleen
3
1
2
body of pancreas
2
2
pancreas
2
1
brain
2
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primary cell
pancreatic cell
1
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