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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ATAC-seq
41
WGBS
37
single cell RNA-seq
27
total RNA-seq
22
snATAC-seq
Assay category
110
DNA accessibility
64
Transcription
41
DNA methylation
Date released
707
February, 2021
291
May, 2020
276
August, 2021
234
May, 2021
205
February, 2023
200
May, 2022
187
June, 2019
168
July, 2018
115
August, 2017
108
July, 2019
72
October, 2019
61
March, 2020
59
September, 2020
49
April, 2018
48
November, 2019
47
September, 2023
41
September, 2018
25
February, 2020
19
April, 2020
18
November, 2018
16
January, 2021
15
February, 2018
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
8
October, 2017
7
August, 2020
5
January, 2019
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
1
August, 2022
1
December, 2018
Available data
134
zippedFastqFolder
38
bed narrowPeak
24
bam
24
fastq
20
bigWig
7
txt
1
bed bed3+
Organism
215
Homo sapiens
Biosample type
134
primary cell
81
tissue
Organ
104
pancreas
80
epithelium
40
liver
14
kidney
2
musculature of body
1
adipose tissue
1
connective tissue
Project
134
HPAP
81
AMP
Genome assembly (visualization)
40
hg19
12
GRCh38
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
Kyle Gaulton, UCSD
14
Katalin Susztak, Upenn
3
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
nucleotide modification
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
215 results
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Clear Filters
ATAC-seq
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
kidney
11
3
skeletal muscle tissue
1
1
adipose tissue
1
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