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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
40
ChIP-seq
14
total RNA-seq
5
ATAC-seq
Assay category
40
DNA binding
14
Transcription
5
DNA accessibility
Target of assay
20
histone
20
histone modification
12
transcription factor
10
broad histone mark
10
narrow histone mark
8
control
5
RNA binding protein
Date released
53
May, 2021
6
May, 2022
Available data
bed narrowPeak
40
bigWig
24
bam
24
fastq
6
txt
2
bed bed3+
Organism
59
Homo sapiens
Biosample type
47
in vitro differentiated cells
7
tissue
5
primary cell
Organ
7
pancreas
Project
152
T1D
59
AMP
Genome assembly (visualization)
10
hg19
Lab
2365
AMP-T2D consortium
78
Katalin Susztak, Upenn
59
Kyle Gaulton, UCSD
24
Bing Ren, UCSD
20
Karen Mohlke, UNC
5
Rohit N. Kulkarni, M.D., Ph.D.
3
Struan F.A. Grant, CHOP
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
target.investigated_as!
nucleotide modification
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
total RNA-seq
ATAC-seq
in vitro differentiated cells
embryonic stem cell
37
5
5
tissue
islet of Langerhans
6
pancreas
1
primary cell
CD8-positive, alpha-beta T cell
3
2
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