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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
total RNA-seq
4
ChIP-seq
2
DNase-seq
1
ATAC-seq
1
Hi-C
1
RRBS
Assay category
5
Transcription
4
DNA binding
3
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
1
control
Date released
5
December, 2019
4
August, 2021
2
July, 2019
2
June, 2019
1
October, 2019
Available data
12
bam
11
bigWig
6
bed bed3+
6
bed narrowPeak
5
tsv
4
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
14
Homo sapiens
Biosample type
401
cell line
361
tissue
15
in vitro differentiated cells
14
primary cell
0
stem cell
Organ
406
epithelium
346
pancreas
40
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
14
AMP
Genome assembly (visualization)
13
hg19
11
GRCh38
Lab
14
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
14 results
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Clear Filters
total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
primary cell
hepatocyte
5
4
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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