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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
19
ATAC-seq
15
ChIP-seq
5
single cell RNA-seq
3
MeRIP-seq
2
Capture-C
Assay category
38
Transcription
19
DNA accessibility
15
DNA binding
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
5
control
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
15
November, 2019
5
July, 2018
5
March, 2020
3
November, 2020
2
August, 2021
Available data
54
bam
53
bigWig
39
tsv
14
bed narrowPeak
5
fastq
1
bedpe bed3+
hic
Organism
77
Homo sapiens
Biosample type
72
cell line
5
primary cell
Organ
87
epithelium
84
bone element
77
pancreas
23
kidney
19
connective tissue
9
musculature of body
6
embryo
6
heart
3
brain
1
adipose tissue
1
limb
1
liver
1
stomach
1
urinary bladder
1
vasculature
Project
73
AMP
4
T1D
Genome assembly (visualization)
54
hg19
52
GRCh38
Lab
74
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
77
inconsistent ontology term
1
audit script error
target.investigated_as!
nucleotide modification
files.file_type!
hic
BIOSAMPLE
ASSAY
77 results
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total RNA-seq
ATAC-seq
ChIP-seq
single cell RNA-seq
MeRIP-seq
Capture-C
cell line
EndoC_BH1
33
19
15
3
2
primary cell
co-expressing pancreatic endocrine cell
2
unclassified pancreatic endocrine cell
2
pancreatic acinar cell
1
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