Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
88
ChIP-seq
10
ATAC-seq
Assay category
98
Transcription
88
DNA binding
10
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
136
May, 2021
45
May, 2020
7
August, 2020
5
March, 2020
3
September, 2020
Available data
196
bigWig
186
bam
169
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
196
Homo sapiens
Biosample type
190
primary cell
4
cell line
2
tissue
Organ
16
pancreas
14
epithelium
Project
AMP
186
T1D
10
HPAP
Genome assembly (visualization)
196
GRCh38
186
hg19
Lab
180
Kyle Gaulton, UCSD
10
Klaus Kaestner, Upenn
6
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
target.investigated_as!
nucleotide modification
award.project!
AMP
BIOSAMPLE
ASSAY
196 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
primary cell
monocyte
53
84
pancreatic alpha cell
7
pancreatic beta cell
3
B cell
2
CD8-positive, alpha-beta T cell
2
+ See 22 more…
cell line
EndoC_BH1
2
2
tissue
islet of Langerhans
2
See all biosamples
Download