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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
166
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
166
DNA binding
12
Transcription
3
3D chromatin structure
3
DNA accessibility
Target of assay
163
histone
163
histone modification
103
narrow histone mark
60
broad histone mark
6
control
Date released
76
October, 2019
60
November, 2017
25
May, 2019
16
July, 2019
7
October, 2017
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
118
tagAlign
47
bed broadPeak
bigBed broadPeak
35
bed bed3+
26
tsv
21
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
184
Homo sapiens
Biosample type
175
tissue
9
primary cell
Organ
616
pancreas
561
connective tissue
559
liver
423
adipose tissue
279
epithelium
194
heart
184
brain
138
vasculature
137
blood vessel
81
artery
58
bone element
55
blood
55
bodily fluid
55
limb
53
kidney
35
musculature of body
29
embryo
29
nerve
15
spleen
11
vein
2
eye
1
pericardium
1
pituitary gland
Project
184
AMP
Genome assembly (visualization)
176
GRCh38
131
hg19
Lab
184
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
nucleotide modification
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
184 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
brain
11
1
caudate nucleus
12
+ See 65 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
cerebellar granule cell
2
Purkinje cell
1
brain pericyte
1
+ See 1 more…
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