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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
296
total RNA-seq
103
ChIP-seq
9
ATAC-seq
6
single cell RNA-seq
4
WGBS
2
FAIRE-seq
2
small RNA-seq
1
DNase-seq
1
Hi-C
Assay category
304
Transcription
103
DNA binding
12
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
46
broad histone mark
38
narrow histone mark
19
transcription factor
9
RNA binding protein
Date released
130
August, 2017
116
July, 2018
43
May, 2021
40
October, 2018
31
November, 2019
26
February, 2021
10
March, 2020
7
October, 2019
6
April, 2018
5
November, 2018
5
October, 2017
4
July, 2019
1
May, 2019
Available data
495
bam
431
bigWig
309
tsv
213
fastq
146
bed narrowPeak
69
bigBed narrowPeak
29
bed bed3+
21
bed broadPeak
19
tagAlign
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
bedpe bed3+
4
hic
1
bedpe
1
hdf5
Organism
418
Homo sapiens
Biosample type
367
tissue
primary cell
55
cell line
2
in vitro differentiated cells
Organ
550
liver
535
connective tissue
424
pancreas
421
adipose tissue
187
heart
175
brain
121
blood vessel
121
vasculature
79
artery
70
epithelium
58
bone element
55
blood
55
bodily fluid
55
limb
35
kidney
29
embryo
29
nerve
25
musculature of body
15
spleen
1
pituitary gland
Project
418
AMP
6
T1D
Genome assembly (visualization)
420
hg19
412
GRCh38
Lab
423
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
48
inconsistent ontology term
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
target.investigated_as!
nucleotide modification
files.file_type!
bigBed broadPeak
biosample_type!
primary cell
BIOSAMPLE
ASSAY
424 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
WGBS
FAIRE-seq
small RNA-seq
DNase-seq
Hi-C
tissue
islet of Langerhans
260
29
3
6
1
1
body of pancreas
2
26
4
2
2
pancreas
1
13
2
1
endocrine pancreas
14
cell line
EndoC_BH1
33
13
2
Panc1
6
1
in vitro differentiated cells
pancreatic PP cell
2
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