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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
137
ChIP-seq
127
total RNA-seq
12
ATAC-seq
4
GRO-seq
1
DNase-seq
Assay category
137
DNA binding
127
Transcription
13
DNA accessibility
Target of assay
90
histone
90
histone modification
45
broad histone mark
44
narrow histone mark
37
transcription factor
10
control
6
RNA binding protein
3
chromatin remodeller
Date released
90
May, 2021
62
August, 2017
34
December, 2017
31
February, 2018
29
August, 2021
22
February, 2021
4
January, 2018
4
October, 2019
3
February, 2023
2
March, 2020
Available data
291
bam
259
bigWig
141
fastq
132
bed narrowPeak
131
tsv
40
tagAlign
25
bed bed3+
17
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
281
Homo sapiens
Biosample type
1826
tissue
614
primary cell
525
cell line
281
in vitro differentiated cells
3
stem cell
Organ
71
connective tissue
21
embryo
21
epithelium
14
liver
3
pancreas
1
heart
Project
281
AMP
Genome assembly (visualization)
254
hg19
243
GRCh38
4
hg18
Lab
271
AMP-T2D consortium
5
Kyle Gaulton, UCSD
5
Struan F.A. Grant, CHOP
Audit category:
93
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
17
inconsistent control read length
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
281 results
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ChIP-seq
total RNA-seq
ATAC-seq
GRO-seq
DNase-seq
in vitro differentiated cells
adipocyte
61
4
3
1
cardiomyocytes
3
59
neural progenitor cell
20
7
cardiac precursors (cardiac muscle cell)
19
pancreatic endoderm
12
4
1
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