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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
172
ChIP-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
172
DNA binding
12
Transcription
5
DNA accessibility
3
3D chromatin structure
Target of assay
166
histone
166
histone modification
106
narrow histone mark
60
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
76
October, 2019
66
November, 2017
June, 2019
25
May, 2019
16
July, 2019
7
October, 2017
2
November, 2018
Available data
213
bam
192
bigWig
173
bed narrowPeak
118
tagAlign
97
bigBed narrowPeak
26
tsv
21
fastq
17
bed broadPeak
8
bigBed broadPeak
5
bed bed3+
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
192
Homo sapiens
Biosample type
177
tissue
15
primary cell
Organ
620
liver
619
pancreas
555
connective tissue
424
adipose tissue
283
epithelium
192
brain
191
heart
148
vasculature
145
blood vessel
83
artery
59
limb
58
bone element
55
blood
55
bodily fluid
51
kidney
31
nerve
29
embryo
27
musculature of body
16
spleen
15
vein
1
pericardium
1
pituitary gland
Project
192
AMP
Genome assembly (visualization)
184
GRCh38
139
hg19
Lab
192
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
nucleotide modification
month_released!
June, 2019
BIOSAMPLE
ASSAY
192 results
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ChIP-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
DNase-seq
FAIRE-seq
tissue
layer of hippocampus
17
temporal lobe
13
1
1
angular gyrus
14
brain
11
1
2
caudate nucleus
12
+ See 65 more…
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
cerebellar granule cell
2
Purkinje cell
1
+ See 1 more…
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