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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
ChIP-seq
32
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
ATAC-seq
1
FAIRE-seq
Assay category
106
DNA binding
35
DNA accessibility
12
Transcription
3
3D chromatin structure
Target of assay
106
histone
106
histone modification
83
narrow histone mark
23
broad histone mark
3
control
Date released
76
October, 2019
November, 2017
30
June, 2019
25
May, 2019
16
July, 2019
7
October, 2017
2
November, 2018
Available data
165
bam
156
bigWig
139
bed narrowPeak
64
bigBed narrowPeak
52
tagAlign
35
bed bed3+
35
bed broadPeak
32
bigBed broadPeak
26
tsv
12
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
156
Homo sapiens
Biosample type
145
tissue
11
primary cell
Organ
623
pancreas
570
connective tissue
425
adipose tissue
354
liver
295
epithelium
224
heart
156
brain
149
vasculature
147
blood vessel
131
kidney
91
limb
85
artery
68
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
29
embryo
18
ureter
16
spleen
15
vein
6
eye
1
pericardium
1
pituitary gland
Project
156
AMP
Genome assembly (visualization)
152
GRCh38
144
hg19
Lab
156
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
target.investigated_as!
nucleotide modification
month_released!
November, 2017
BIOSAMPLE
ASSAY
156 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
temporal lobe
13
1
1
angular gyrus
14
frontal cortex
2
1
1
1
cerebellum (Hemisphere)
1
1
1
1
+ See 69 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
cerebellar granule cell
2
Purkinje cell
1
+ See 2 more…
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