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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
88
ChIP-seq
52
single cell RNA-seq
49
ATAC-seq
41
WGBS
21
snATAC-seq
Assay category
150
Transcription
88
DNA binding
70
DNA accessibility
41
DNA methylation
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
136
May, 2021
134
May, 2022
45
May, 2020
22
September, 2020
7
August, 2020
5
March, 2020
Available data
196
bigWig
186
bam
169
fastq
153
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
349
Homo sapiens
Biosample type
343
primary cell
4
cell line
2
tissue
Organ
96
pancreas
94
epithelium
Project
AMP
186
T1D
163
HPAP
Genome assembly (visualization)
196
GRCh38
186
hg19
Lab
180
Kyle Gaulton, UCSD
163
Klaus Kaestner, Upenn
6
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
target.investigated_as!
nucleotide modification
target.investigated_as!!
nucleotide modification
award.project!
AMP
BIOSAMPLE
ASSAY
349 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
WGBS
snATAC-seq
primary cell
monocyte
53
84
Langerhans cell
52
21
pancreatic alpha cell
29
25
pancreatic beta cell
16
16
pancreatic acinar cell
4
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cell line
EndoC_BH1
2
2
tissue
islet of Langerhans
2
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