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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
378
ChIP-seq
10
ATAC-seq
2
DNase-seq
Assay category
378
DNA binding
12
DNA accessibility
Target of assay
341
transcription factor
88
recombinant protein
62
RNA binding protein
32
histone
32
histone modification
30
chromatin remodeller
16
broad histone mark
16
narrow histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
15
October, 2019
14
February, 2021
12
November, 2019
1
March, 2020
1
May, 2021
Available data
582
bam
508
bigWig
427
fastq
390
bed narrowPeak
355
bigBed narrowPeak
110
tsv
59
bed broadPeak
59
bigBed broadPeak
20
tagAlign
3
bed bed3+
3
tar
1
bed bed3
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
1
hic
1
txt
Organism
390
Homo sapiens
Biosample type
984
tissue
390
cell line
295
primary cell
132
in vitro differentiated cells
2
stem cell
Organ
294
liver
54
blood
54
bodily fluid
21
pancreas
15
epithelium
12
artery
12
blood vessel
12
heart
12
vasculature
8
kidney
Project
388
AMP
2
T1D
Genome assembly (visualization)
386
hg19
358
GRCh38
Lab
390
AMP-T2D consortium
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
nucleotide modification
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
390 results
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ChIP-seq
ATAC-seq
DNase-seq
cell line
HepG2
293
1
GM12878
54
EndoC_BH1
13
1
smooth muscle cell of the coronary artery
4
8
Panc1
6
1
RCC 7860 HIF1a re-expression
3
RCC 7860 HIF2a over-expression
2
RCC 7860 vector
2
glomerular visceral epithelial cell
1
iPSC derived cell line
1
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