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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
569
ChIP-seq
185
total RNA-seq
24
ATAC-seq
8
DNase-seq
5
WGBS
3
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
1
single cell RNA-seq
Assay category
569
DNA binding
189
Transcription
32
DNA accessibility
7
DNA methylation
3
3D chromatin structure
Target of assay
327
transcription factor
124
histone modification
123
histone
115
control
82
recombinant protein
66
narrow histone mark
57
RNA binding protein
57
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
49
October, 2019
40
May, 2022
10
July, 2019
5
December, 2019
5
January, 2019
4
August, 2021
3
February, 2021
3
March, 2020
2
February, 2020
2
June, 2019
1
December, 2018
Available data
723
bam
639
bigWig
465
fastq
454
bed narrowPeak
384
bigBed narrowPeak
170
tsv
86
tagAlign
65
bed broadPeak
65
bigBed broadPeak
15
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
1
bed bed3
1
bedpe bed3+
1
csv
1
hdf5
1
hic
Organism
803
Homo sapiens
Biosample type
404
tissue
370
cell line
15
in vitro differentiated cells
14
primary cell
Organ
937
pancreas
760
liver
684
connective tissue
521
epithelium
491
adipose tissue
393
heart
352
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
803
AMP
Genome assembly (visualization)
641
hg19
562
GRCh38
Lab
763
AMP-T2D consortium
40
Karen Mohlke, UNC
Bing Ren, UCSD
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
nucleotide modification
lab.title!
Bing Ren, UCSD
BIOSAMPLE
ASSAY
803 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
single cell RNA-seq
tissue
liver
145
167
20
2
3
1
1
1
1
1
tibial nerve
35
5
1
2
right lobe of liver
10
3
1
2
1
2
cell line
HepG2
360
5
1
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
hepatic stellate cell
1
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