Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
ChIP-seq
113
total RNA-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
424
DNA binding
115
Transcription
DNA accessibility
4
3D chromatin structure
1
DNA sequencing
Target of assay
304
transcription factor
80
control
73
recombinant protein
44
RNA binding protein
38
histone
38
histone modification
23
chromatin remodeller
19
broad histone mark
19
narrow histone mark
nucleotide modification
2
other context
2
other post-translational modification
Date released
315
November, 2017
87
February, 2021
November, 2018
44
August, 2021
28
December, 2018
28
October, 2019
23
January, 2019
15
November, 2019
9
March, 2020
6
February, 2023
5
May, 2021
3
November, 2020
2
March, 2023
1
May, 2020
1
October, 2022
Available data
509
bam
460
bigWig
366
fastq
336
bed narrowPeak
297
bigBed narrowPeak
118
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
hdf5
1
txt
1
vcf
Organism
563
Homo sapiens
Biosample type
2289
tissue
799
primary cell
567
cell line
351
in vitro differentiated cells
10
stem cell
Organ
354
liver
69
pancreas
58
artery
58
blood vessel
58
heart
58
vasculature
56
epithelium
45
blood
45
bodily fluid
18
kidney
8
embryo
1
mammary gland
Project
556
AMP
9
T1D
2
community
Genome assembly (visualization)
461
hg19
395
GRCh38
Lab
523
AMP-T2D consortium
34
Bing Ren, UCSD
5
Kyle Gaulton, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
2
Anna Gloyn, Oxford
Audit category:
70
inconsistent ontology term
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
1
inconsistent assembly
target.investigated_as!
nucleotide modification
month_released!
November, 2018
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
567 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
pCHi-C
STARR-seq
Hi-C
CRISPR genome editing followed by DNA sequencing
MeRIP-seq
Capture-C
HiChIP
CRISPR genome editing followed by sgRNA sequencing
MPRA
shRNA RNA-seq
siRNA RNA-seq
whole genome sequencing assay
cell line
HepG2
333
14
2
2
2
1
EndoC_BH1
15
33
1
3
3
2
2
1
smooth muscle cell of the coronary artery
6
52
GM12878
45
Panc1
13
1
+ See 14 more…
See all biosamples
Download