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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
424
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
3
MeRIP-seq
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
424
DNA binding
Target of assay
304
transcription factor
77
control
73
recombinant protein
44
RNA binding protein
38
histone
38
histone modification
23
chromatin remodeller
19
broad histone mark
19
narrow histone mark
2
other context
2
other post-translational modification
Date released
315
November, 2017
November, 2018
27
December, 2018
23
October, 2019
18
August, 2021
18
January, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
405
bam
360
fastq
355
bigWig
336
bed narrowPeak
297
bigBed narrowPeak
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
Organism
424
Homo sapiens
Biosample type
897
tissue
424
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
333
liver
45
blood
45
bodily fluid
28
pancreas
15
epithelium
10
kidney
6
artery
6
blood vessel
6
heart
6
vasculature
Project
422
AMP
2
T1D
Genome assembly (visualization)
353
hg19
290
GRCh38
Lab
406
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
25
inconsistent ontology term
1
inconsistent control
Audit category:
10
missing controlled_by
Audit category:
21
inconsistent control read length
4
inconsistent control run_type
target.investigated_as!
nucleotide modification
month_released!
November, 2018
BIOSAMPLE
ASSAY
424 results
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ChIP-seq
cell line
HepG2
333
GM12878
45
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
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