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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
Assay category
39
DNA binding
Target of assay
289
transcription factor
108
control
103
histone modification
102
histone
66
recombinant protein
60
narrow histone mark
42
broad histone mark
39
RNA binding protein
18
chromatin remodeller
2
other context
2
other post-translational modification
Date released
34
November, 2017
November, 2018
4
December, 2017
1
August, 2021
Available data
38
bam
38
fastq
37
bed narrowPeak
37
bigWig
36
bigBed narrowPeak
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
39
Homo sapiens
Biosample type
35
cell line
2
in vitro differentiated cells
2
tissue
Organ
39
liver
11
heart
10
connective tissue
9
pancreas
8
blood
8
bodily fluid
8
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
39
AMP
Genome assembly (visualization)
36
hg19
32
GRCh38
Lab
38
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent control run_type
target.investigated_as!
nucleotide modification
month_released!
November, 2018
BIOSAMPLE
ASSAY
39 results
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ChIP-seq
cell line
HepG2
35
in vitro differentiated cells
hepatocyte
2
tissue
liver
1
right lobe of liver
1
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