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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
118
total RNA-seq
84
RNA microarray
34
ChIP-seq
2
single cell RNA-seq
1
pCHi-C
Assay category
120
Transcription
DNA accessibility
34
DNA binding
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
200
February, 2021
23
October, 2019
5
May, 2019
4
February, 2023
2
August, 2021
2
February, 2020
2
July, 2019
1
May, 2021
Available data
146
bam
137
bigWig
116
tsv
88
txt
25
bed narrowPeak
21
bigBed narrowPeak
6
tagAlign
Organism
239
Homo sapiens
Biosample type
178
tissue
58
cell line
3
primary cell
Organ
768
pancreas
762
liver
650
connective tissue
483
adipose tissue
398
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
238
AMP
1
T1D
Genome assembly (visualization)
137
GRCh38
137
hg19
Lab
238
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
target.investigated_as!
nucleotide modification
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
239 results
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total RNA-seq
RNA microarray
ChIP-seq
single cell RNA-seq
pCHi-C
tissue
bone element
84
bone tissue
58
tibial artery
1
23
coronary artery
1
5
pulmonary artery
2
+ See 4 more…
cell line
smooth muscle cell of the coronary artery
52
6
primary cell
endothelial cell of coronary artery
1
megakaryocyte
1
smooth muscle cell of the coronary artery
1
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