Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
total RNA-seq
51
ChIP-seq
2
Hi-C
2
single cell RNA-seq
Assay category
58
Transcription
DNA accessibility
51
DNA binding
2
3D chromatin structure
Target of assay
35
histone
35
histone modification
23
broad histone mark
12
narrow histone mark
11
control
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
41
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
July, 2019
1
March, 2020
Available data
105
bam
91
bigWig
58
tsv
35
bed narrowPeak
31
bigBed narrowPeak
6
tagAlign
2
bed broadPeak
2
bigBed broadPeak
2
hic
1
bedpe bed3+
Organism
111
Homo sapiens
Biosample type
58
cell line
32
tissue
21
primary cell
Organ
768
pancreas
762
liver
650
connective tissue
483
adipose tissue
398
epithelium
276
heart
249
brain
191
kidney
178
vasculature
174
blood vessel
147
bone element
92
artery
78
limb
61
musculature of body
60
blood
60
bodily fluid
40
nerve
37
embryo
29
eye
23
spleen
19
vein
10
lung
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
111
AMP
Genome assembly (visualization)
93
hg19
89
GRCh38
Lab
111
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
nucleotide modification
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
111 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
Hi-C
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
23
coronary artery
1
5
pulmonary artery
2
primary cell
endothelial cell of umbilical vein
17
2
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
Download