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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
ATAC-seq
34
ChIP-seq
4
DNase-seq
2
single cell RNA-seq
Assay category
56
Transcription
34
DNA binding
4
DNA accessibility
Target of assay
20
histone
20
histone modification
14
broad histone mark
9
control
6
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
58
February, 2021
25
October, 2019
5
May, 2019
2
August, 2021
2
February, 2020
2
June, 2019
Available data
90
bam
81
bigWig
56
tsv
29
bed narrowPeak
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
94
Homo sapiens
Biosample type
58
cell line
36
tissue
primary cell
Organ
755
liver
622
connective tissue
514
pancreas
483
adipose tissue
333
heart
261
brain
243
kidney
153
blood vessel
153
vasculature
146
bone element
114
limb
94
artery
84
epithelium
81
musculature of body
60
blood
60
bodily fluid
42
nerve
37
embryo
28
eye
24
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
94
AMP
Genome assembly (visualization)
81
GRCh38
81
hg19
Lab
94
AMP-T2D consortium
target.investigated_as!
nucleotide modification
assay_title!
ATAC-seq
biosample_type!
primary cell
BIOSAMPLE
ASSAY
94 results
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total RNA-seq
ChIP-seq
DNase-seq
single cell RNA-seq
cell line
smooth muscle cell of the coronary artery
52
6
tissue
tibial artery
1
23
2
coronary artery
1
5
2
pulmonary artery
2
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