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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
ChIP-seq
45
ATAC-seq
37
DNase-seq
Assay category
82
DNA accessibility
52
DNA binding
Target of assay
47
histone
47
histone modification
30
broad histone mark
17
narrow histone mark
5
transcription factor
1
RNA binding protein
Date released
43
June, 2019
35
February, 2023
21
October, 2019
13
August, 2017
12
February, 2021
9
May, 2019
1
July, 2019
Available data
159
bam
153
bigWig
134
bed narrowPeak
72
bigBed narrowPeak
67
tsv
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
21
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
134
Homo sapiens
Biosample type
113
tissue
12
cell line
9
primary cell
Organ
441
liver
214
pancreas
203
brain
191
heart
183
kidney
151
epithelium
133
vasculature
129
blood vessel
92
limb
75
connective tissue
74
artery
60
musculature of body
54
blood
54
bodily fluid
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
134
AMP
Genome assembly (visualization)
120
GRCh38
99
hg19
Lab
134
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
ATAC-seq
DNase-seq
tissue
coronary artery
3
36
2
tibial artery
18
1
2
muscle of leg
6
13
muscle of arm
17
skeletal muscle tissue
13
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
4
8
primary cell
skeletal muscle satellite cell
7
skeletal muscle cell
1
1
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