Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
58
total RNA-seq
45
ATAC-seq
37
DNase-seq
4
RRBS
3
single cell RNA-seq
2
Hi-C
1
pCHi-C
1
snATAC-seq
Assay category
83
DNA accessibility
73
DNA binding
61
Transcription
4
DNA methylation
2
3D chromatin structure
Target of assay
53
histone
53
histone modification
34
broad histone mark
19
narrow histone mark
15
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
45
June, 2019
35
February, 2023
26
August, 2017
26
October, 2019
July, 2019
12
May, 2019
5
March, 2020
4
February, 2020
2
August, 2021
2
May, 2022
1
January, 2018
Available data
151
bam
145
bigWig
133
bed narrowPeak
72
bigBed narrowPeak
61
tsv
50
bed broadPeak
38
bed bed3+
37
bigBed broadPeak
21
tagAlign
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
224
Homo sapiens
Biosample type
147
tissue
66
cell line
11
primary cell
Organ
935
pancreas
781
liver
666
connective tissue
508
epithelium
479
adipose tissue
368
heart
343
kidney
268
brain
224
vasculature
219
blood vessel
159
bone element
138
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
224
AMP
Genome assembly (visualization)
173
GRCh38
158
hg19
Lab
224
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
target.investigated_as!
nucleotide modification
month_released!
July, 2019
BIOSAMPLE
ASSAY
224 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
RRBS
single cell RNA-seq
Hi-C
pCHi-C
snATAC-seq
tissue
coronary artery
5
1
35
2
skeletal muscle tissue
22
1
4
1
1
tibial artery
23
1
1
2
muscle of leg
7
13
muscle of arm
17
+ See 6 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
See all biosamples
Download