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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
136
total RNA-seq
69
ChIP-seq
21
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
2
Capture-C
2
single cell RNA-seq
Assay category
138
Transcription
69
DNA binding
21
DNA accessibility
4
3D chromatin structure
Target of assay
37
control
34
histone
34
histone modification
broad histone mark
17
transcription factor
15
narrow histone mark
5
RNA binding protein
Date released
117
May, 2021
26
February, 2021
23
February, 2018
17
August, 2017
16
August, 2021
14
February, 2023
9
December, 2017
8
March, 2020
6
October, 2019
4
January, 2018
2
December, 2019
1
August, 2018
Available data
254
bam
222
bigWig
131
tsv
110
fastq
bed narrowPeak
26
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
7
bedpe bed3+
5
bed bed3
4
hic
3
txt
2
ibed
1
bed broadPeak
1
bigBed broadPeak
Organism
243
Homo sapiens
Biosample type
1741
tissue
783
primary cell
253
cell line
243
in vitro differentiated cells
8
stem cell
Organ
44
connective tissue
15
embryo
6
epithelium
1
adipose tissue
1
heart
1
liver
1
pancreas
Project
243
AMP
Genome assembly (visualization)
166
hg19
137
GRCh38
4
hg18
Lab
203
AMP-T2D consortium
37
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
102
inconsistent ontology term
2
audit script error
Audit category:
6
missing controlled_by
target.investigated_as!
nucleotide modification
broad histone mark
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
243 results
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total RNA-seq
ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
Capture-C
single cell RNA-seq
in vitro differentiated cells
cardiomyocytes
59
embryonic stem cell
7
28
5
1
adipocyte
5
17
7
1
cardiac precursors (cardiac muscle cell)
19
1
neural progenitor cell
7
7
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