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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
106
single cell RNA-seq
64
ATAC-seq
59
total RNA-seq
12
ChIP-seq
6
snATAC-seq
5
STARR-seq
2
Capture-C
1
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
165
Transcription
70
DNA accessibility
12
DNA binding
1
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
broad histone mark
2
histone
2
histone modification
Date released
257
August, 2021
161
May, 2022
160
February, 2023
141
February, 2021
94
October, 2019
87
August, 2017
85
November, 2017
81
May, 2020
71
May, 2021
59
September, 2020
47
September, 2023
32
March, 2020
31
June, 2019
29
October, 2018
25
February, 2020
23
May, 2019
20
May, 2024
19
April, 2020
17
December, 2017
17
July, 2019
17
November, 2018
16
January, 2021
15
April, 2019
14
May, 2023
8
February, 2018
7
August, 2020
5
December, 2018
5
December, 2019
5
January, 2018
5
March, 2023
5
November, 2020
5
October, 2017
4
January, 2019
4
July, 2018
4
September, 2017
2
March, 2019
2
November, 2019
1
August, 2018
1
August, 2022
1
October, 2022
1
September, 2018
Available data
108
tsv
64
bed narrowPeak
64
xls
57
txt
8
bam
8
tagAlign
1
bedpe bed3+
1
vcf
Organism
256
Homo sapiens
Biosample type
228
tissue
21
cell line
7
in vitro differentiated cells
1
primary cell
Organ
129
kidney
92
heart
17
liver
6
blood vessel
6
vasculature
4
pancreas
3
epithelium
2
artery
1
adipose tissue
1
connective tissue
Project
257
AMP
Genome assembly (visualization)
98
GRCh38
hg19
Lab
127
Katalin Susztak, Upenn
109
AMP-T2D consortium
21
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
target.investigated_as!
nucleotide modification
broad histone mark
assembly!
hg19
BIOSAMPLE
ASSAY
257 results
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single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
8
64
49
6
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 11 more…
cell line
HepG2
9
4
2
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
7
primary cell
hepatocyte
1
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