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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
total RNA-seq
200
ATAC-seq
184
single cell RNA-seq
125
ChIP-seq
56
snATAC-seq
47
WGBS
31
DNase-seq
17
pCHi-C
10
Hi-C
10
RRBS
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
433
Transcription
288
DNA accessibility
125
DNA binding
58
DNA methylation
10
3D chromatin structure
Target of assay
237
histone
237
histone modification
broad histone mark
115
narrow histone mark
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
147
May, 2020
137
May, 2021
134
May, 2022
88
February, 2023
59
September, 2020
56
September, 2018
48
February, 2021
48
July, 2018
43
April, 2018
39
June, 2019
30
August, 2017
28
July, 2019
19
October, 2019
8
January, 2021
7
August, 2020
6
November, 2017
6
November, 2020
5
December, 2019
5
September, 2017
3
August, 2018
3
June, 2018
3
October, 2022
2
August, 2021
2
May, 2019
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
485
bigWig
477
bam
360
fastq
267
tsv
183
bed narrowPeak
153
zippedFastqFolder
88
bigBed narrowPeak
47
tagAlign
41
bed broadPeak
41
bigBed broadPeak
36
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
931
Homo sapiens
Biosample type
2285
tissue
931
primary cell
557
cell line
301
in vitro differentiated cells
8
stem cell
Organ
354
epithelium
307
pancreas
32
connective tissue
28
kidney
24
vasculature
19
blood vessel
15
brain
12
liver
11
heart
11
vein
8
blood
8
bodily fluid
8
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
446
AMP
324
HPAP
160
T1D
1
ITG
Genome assembly (visualization)
500
hg19
437
GRCh38
Lab
434
AMP-T2D consortium
324
Klaus Kaestner, Upenn
172
Kyle Gaulton, UCSD
1
ITG
Audit category:
41
inconsistent ontology term
31
audit script error
Audit category:
23
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
nucleotide modification
broad histone mark
control
BIOSAMPLE
ASSAY
931 results
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total RNA-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
DNAme array
FAIRE-seq
primary cell
pancreatic alpha cell
52
35
12
4
31
1
Langerhans cell
85
48
monocyte
54
15
41
1
1
pancreatic beta cell
21
23
12
4
16
1
exocrine cell
39
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