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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
33
DNase-seq
9
snATAC-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
ATAC-seq
2
small RNA-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
89
DNA binding
44
DNA accessibility
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
51
transcription factor
34
histone
34
histone modification
20
broad histone mark
14
narrow histone mark
12
control
10
RNA binding protein
chromatin remodeller
Date released
43
June, 2019
26
August, 2017
25
December, 2018
13
November, 2018
12
January, 2019
10
July, 2019
8
January, 2021
7
May, 2019
5
March, 2020
2
February, 2020
2
January, 2018
2
May, 2022
Available data
113
bigWig
107
bam
104
bed narrowPeak
91
bigBed narrowPeak
52
fastq
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
hic
1
txt
Organism
155
Homo sapiens
Biosample type
82
tissue
51
cell line
22
primary cell
Organ
941
pancreas
768
liver
682
connective tissue
520
epithelium
491
adipose tissue
354
kidney
353
heart
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
59
blood
59
bodily fluid
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
147
AMP
8
T1D
Genome assembly (visualization)
118
hg19
97
GRCh38
Lab
147
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
9
inconsistent ontology term
1
audit script error
target.investigated_as!
nucleotide modification
chromatin remodeller
BIOSAMPLE
ASSAY
155 results
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ChIP-seq
DNase-seq
snATAC-seq
Hi-C
total RNA-seq
RRBS
ATAC-seq
small RNA-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
22
1
1
4
1
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
+ See 3 more…
cell line
GM12878
50
1
primary cell
skeletal muscle satellite cell
8
1
1
peripheral blood mononuclear cell
8
skeletal muscle cell
2
1
1
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