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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
Assay category
DNA accessibility
65
DNA binding
Target of assay
49
transcription factor
30
histone
30
histone modification
16
broad histone mark
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
55
November, 2017
8
August, 2017
2
October, 2019
Available data
2598
bam
2379
bigWig
1586
tsv
1146
fastq
896
bed narrowPeak
652
bigBed narrowPeak
224
tagAlign
157
txt
93
zippedFastqFolder
85
bed broadPeak
65
bigBed broadPeak
51
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
3
tar
2
ibed
1
bedpe
1
vcf
Organism
65
Homo sapiens
Biosample type
52
cell line
13
primary cell
Organ
52
liver
4
epithelium
4
vasculature
3
blood vessel
3
brain
2
vein
Project
65
AMP
Genome assembly (visualization)
65
hg19
49
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
8
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
nucleotide modification
narrow histone mark
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
cell line
HepG2
52
primary cell
skeletal muscle myoblast
8
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
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