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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
201
DNase-seq
13
ChIP-seq
Assay category
201
DNA accessibility
13
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
narrow histone mark
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
185
June, 2019
10
August, 2017
9
October, 2019
6
November, 2018
3
November, 2017
1
November, 2020
Available data
2356
bam
2159
bigWig
1426
tsv
998
bed narrowPeak
802
fastq
549
bigBed narrowPeak
249
bed bed3+
236
bed broadPeak
214
bigBed broadPeak
178
tagAlign
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
21
bedpe bed3+
21
hic
11
bed bed3
7
bed bedgraph
7
csv
4
hdf5
3
cool
2
ibed
1
bedpe
1
tar
Organism
214
Homo sapiens
Biosample type
173
tissue
39
primary cell
1
cell line
1
in vitro differentiated cells
Organ
78
kidney
liver
36
limb
35
brain
33
musculature of body
30
heart
20
epithelium
18
ureter
15
vasculature
12
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
214
AMP
Genome assembly (visualization)
210
GRCh38
191
hg19
Lab
214
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
inconsistent assembly
target.investigated_as!
nucleotide modification
narrow histone mark
organ_slims!
liver
BIOSAMPLE
ASSAY
214 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
brain
14
kidney
13
muscle of leg
13
+ See 37 more…
primary cell
skeletal muscle myoblast
1
8
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
+ See 16 more…
cell line
Panc1
1
in vitro differentiated cells
adipocyte
1
See all biosamples
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