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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
16
ChIP-seq
4
total RNA-seq
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
34
DNA accessibility
16
DNA binding
6
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
narrow histone mark
Date released
37
June, 2019
8
August, 2017
5
July, 2019
4
May, 2019
2
March, 2020
1
January, 2018
Available data
57
bigWig
51
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
34
bed bed3+
33
bigBed broadPeak
10
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
57
Homo sapiens
Biosample type
50
tissue
7
primary cell
Organ
570
liver
554
pancreas
552
connective tissue
423
adipose tissue
253
epithelium
184
heart
130
vasculature
126
blood vessel
116
brain
116
kidney
79
artery
77
limb
58
bone element
57
musculature of body
54
blood
54
bodily fluid
23
nerve
22
embryo
18
ureter
14
spleen
10
vein
5
eye
1
pericardium
Project
57
AMP
Genome assembly (visualization)
56
hg19
48
GRCh38
Lab
57
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
target.investigated_as!
nucleotide modification
narrow histone mark
BIOSAMPLE
ASSAY
57 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
WGBS
tissue
muscle of leg
13
4
1
muscle of arm
17
skeletal muscle tissue
8
1
1
1
psoas muscle
2
forelimb muscle
1
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primary cell
skeletal muscle satellite cell
4
1
1
skeletal muscle cell
1
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