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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
550
ChIP-seq
185
total RNA-seq
ATAC-seq
6
DNase-seq
4
WGBS
3
Hi-C
3
pCHi-C
2
STARR-seq
1
RRBS
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
550
DNA binding
186
Transcription
6
DNA accessibility
5
DNA methylation
3
3D chromatin structure
1
DNA sequencing
Target of assay
338
transcription factor
108
control
103
histone modification
102
histone
82
recombinant protein
60
narrow histone mark
58
RNA binding protein
42
broad histone mark
23
chromatin remodeller
other context
2
other post-translational modification
Date released
313
November, 2017
194
May, 2020
63
December, 2017
53
August, 2017
53
November, 2018
35
August, 2021
20
May, 2022
July, 2019
6
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
669
bam
591
bigWig
462
fastq
416
bed narrowPeak
355
bigBed narrowPeak
167
tsv
86
tagAlign
62
bed broadPeak
62
bigBed broadPeak
12
bed bed3+
3
tar
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
csv
1
vcf
Organism
756
Homo sapiens
Biosample type
398
cell line
332
tissue
15
in vitro differentiated cells
11
primary cell
Organ
788
pancreas
756
liver
641
connective tissue
473
adipose tissue
408
epithelium
325
heart
268
kidney
265
brain
180
vasculature
175
blood vessel
147
bone element
109
limb
94
artery
85
musculature of body
68
blood
68
bodily fluid
42
nerve
37
embryo
32
eye
22
vein
21
spleen
20
lung
18
ureter
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
756
AMP
Genome assembly (visualization)
591
hg19
519
GRCh38
Lab
705
AMP-T2D consortium
31
Bing Ren, UCSD
20
Karen Mohlke, UNC
Audit category:
27
inconsistent control
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
other context
assay_title!
ATAC-seq
month_released!
July, 2019
BIOSAMPLE
ASSAY
756 results
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Clear Filters
ChIP-seq
total RNA-seq
DNase-seq
WGBS
Hi-C
pCHi-C
STARR-seq
RRBS
single cell RNA-seq
whole genome sequencing assay
cell line
HepG2
376
14
1
2
2
2
1
tissue
liver
145
165
2
3
1
1
1
1
right lobe of liver
10
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
4
5
1
hepatic stellate cell
1
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