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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
41
WGBS
34
single cell RNA-seq
26
total RNA-seq
22
snATAC-seq
15
ChIP-seq
Assay category
60
Transcription
41
DNA methylation
22
DNA accessibility
15
DNA binding
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
693
February, 2021
406
August, 2017
404
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
95
zippedFastqFolder
15
fastq
14
bam
14
tagAlign
7
txt
6
bed narrowPeak
6
bigBed narrowPeak
6
bigWig
3
bed broadPeak
1
bed bed3+
Organism
138
Homo sapiens
Biosample type
95
primary cell
43
tissue
Organ
47
pancreas
41
epithelium
20
liver
15
brain
2
musculature of body
Project
95
HPAP
43
AMP
Genome assembly (visualization)
7
hg19
6
GRCh38
Lab
95
Klaus Kaestner, Upenn
20
Karen Mohlke, UNC
17
AMP-T2D consortium
6
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
4
missing controlled_by
target.investigated_as!
other context
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
138 results
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Clear Filters
WGBS
single cell RNA-seq
total RNA-seq
snATAC-seq
ChIP-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
pancreatic beta cell
16
tissue
liver
20
brain
15
islet of Langerhans
6
skeletal muscle tissue
1
1
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