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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ATAC-seq
52
total RNA-seq
41
WGBS
35
single cell RNA-seq
32
ChIP-seq
22
snATAC-seq
Assay category
87
Transcription
41
DNA methylation
32
DNA binding
22
DNA accessibility
Target of assay
32
histone
32
histone modification
17
broad histone mark
15
narrow histone mark
Date released
693
February, 2021
406
August, 2017
404
November, 2017
365
May, 2021
292
October, 2019
243
August, 2021
241
May, 2020
218
June, 2019
168
July, 2018
123
May, 2022
120
May, 2019
102
February, 2023
102
July, 2019
94
December, 2017
85
November, 2018
80
April, 2019
76
October, 2018
60
March, 2020
59
September, 2018
56
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
35
November, 2019
30
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
15
November, 2020
15
October, 2017
10
December, 2019
6
September, 2017
5
January, 2018
5
March, 2023
4
August, 2018
4
May, 2023
4
October, 2022
3
June, 2018
1
August, 2022
1
March, 2019
Available data
95
zippedFastqFolder
65
fastq
64
bam
58
bigWig
32
bed narrowPeak
26
tsv
7
txt
1
bed bed3+
1
csv
Organism
182
Homo sapiens
Biosample type
154
primary cell
28
tissue
Organ
105
pancreas
88
epithelium
20
liver
2
musculature of body
Project
95
HPAP
87
AMP
Genome assembly (visualization)
59
hg19
58
GRCh38
Lab
95
Klaus Kaestner, Upenn
61
AMP-T2D consortium
20
Karen Mohlke, UNC
6
Kyle Gaulton, UCSD
Audit category:
1
audit script error
Audit category:
32
missing controlled_by
target.investigated_as!
other context
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
182 results
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Clear Filters
total RNA-seq
WGBS
single cell RNA-seq
ChIP-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
10
25
pancreatic beta cell
10
16
pancreatic ductal cell
4
13
pancreatic endocrine cell
11
+ See 2 more…
tissue
liver
20
islet of Langerhans
6
skeletal muscle tissue
1
1
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