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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
401
Transcription
DNA binding
6
DNA methylation
2
DNA accessibility
Date released
386
February, 2021
12
July, 2019
6
August, 2017
2
February, 2020
1
August, 2018
1
August, 2021
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
Available data
402
bam
402
bigWig
401
tsv
5
fastq
2
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bed narrowPeak
2
bigBed bedMethyl
2
bigBed broadPeak
2
bigBed narrowPeak
1
bedpe bed3+
Organism
411
Homo sapiens
Biosample type
409
tissue
2
primary cell
1
in vitro differentiated cells
Organ
576
pancreas
506
connective tissue
412
adipose tissue
292
epithelium
227
kidney
216
liver
212
heart
147
bone element
88
vasculature
85
blood vessel
64
brain
62
artery
56
musculature of body
48
limb
28
eye
20
lung
18
ureter
15
embryo
8
blood
8
bodily fluid
7
nerve
5
vein
4
skeleton
4
spleen
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
412
AMP
Genome assembly (visualization)
403
GRCh38
401
hg19
Lab
412
AMP-T2D consortium
target.investigated_as!
other context
assay_title!
ATAC-seq
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
412 results
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total RNA-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
2
subcutaneous abdominal adipose tissue
3
visceral abdominal adipose tissue
3
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
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