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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
ChIP-seq
4
WGBS
3
total RNA-seq
ATAC-seq
2
pCHi-C
1
RNA microarray
Assay category
54
DNA binding
4
DNA methylation
3
Transcription
Target of assay
30
histone
30
histone modification
24
control
20
broad histone mark
10
narrow histone mark
Date released
40
August, 2017
18
October, 2018
2
February, 2020
1
August, 2018
1
August, 2021
1
March, 2020
1
May, 2023
Available data
439
bam
bigWig
401
tsv
42
fastq
9
bed narrowPeak
8
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
63
Homo sapiens
Biosample type
63
tissue
1
in vitro differentiated cells
Organ
212
pancreas
167
liver
154
epithelium
148
kidney
126
heart
98
connective tissue
89
bone element
64
adipose tissue
62
brain
38
vasculature
37
blood vessel
28
musculature of body
27
eye
25
limb
20
lung
14
blood
14
bodily fluid
13
artery
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
64
AMP-T2D consortium
target.investigated_as!
other context
assay_title!
ATAC-seq
files.file_type!
bigWig
BIOSAMPLE
ASSAY
64 results
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ChIP-seq
WGBS
total RNA-seq
pCHi-C
RNA microarray
tissue
subcutaneous abdominal adipose tissue
35
3
subcutaneous adipose tissue
10
1
1
omental fat pad
8
1
adipose tissue
1
1
1
1
in vitro differentiated cells
white fat cell
1
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