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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
44
ChIP-seq
5
DNase-seq
Assay category
44
DNA binding
5
DNA accessibility
Target of assay
42
transcription factor
3
chromatin remodeller
3
histone
3
histone modification
2
RNA binding protein
2
broad histone mark
1
narrow histone mark
other context
1
other post-translational modification
Date released
44
November, 2017
3
November, 2018
2
June, 2019
Available data
652
bam
593
bigWig
436
fastq
414
bed narrowPeak
331
bigBed narrowPeak
174
tsv
75
tagAlign
49
bed broadPeak
49
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
49
Homo sapiens
Biosample type
44
cell line
3
tissue
2
primary cell
Organ
78
kidney
49
liver
38
brain
36
limb
33
musculature of body
30
heart
22
epithelium
18
ureter
17
vasculature
13
blood vessel
9
connective tissue
7
pancreas
4
artery
4
eye
4
vein
2
adipose tissue
2
nerve
1
spleen
Project
49
AMP
Genome assembly (visualization)
49
hg19
37
GRCh38
Lab
49
AMP-T2D consortium
Audit category:
inconsistent control read length
target.investigated_as!
other context
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
49 results
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ChIP-seq
DNase-seq
cell line
HepG2
44
tissue
liver
2
right lobe of liver
1
primary cell
hepatic stellate cell
1
hepatocyte
1
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