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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
total RNA-seq
19
ATAC-seq
13
ChIP-seq
3
MeRIP-seq
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
1
Hi-C
Assay category
34
Transcription
20
DNA accessibility
13
DNA binding
1
3D chromatin structure
Target of assay
12
histone
12
histone modification
6
broad histone mark
6
narrow histone mark
control
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
21
May, 2021
14
November, 2019
5
March, 2020
3
November, 2020
2
August, 2021
2
October, 2019
1
February, 2023
Available data
50
bigWig
49
bam
35
tsv
15
bed narrowPeak
1
bedpe bed3+
1
bigBed narrowPeak
1
hic
Organism
73
Homo sapiens
Biosample type
385
primary cell
74
cell line
20
in vitro differentiated cells
15
tissue
Organ
339
liver
81
pancreas
74
epithelium
64
artery
64
blood vessel
64
heart
64
vasculature
55
blood
55
bodily fluid
16
kidney
8
embryo
1
mammary gland
Project
70
AMP
4
T1D
Genome assembly (visualization)
52
hg19
49
GRCh38
Lab
71
AMP-T2D consortium
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
71
inconsistent ontology term
target.investigated_as!
other context
control
BIOSAMPLE
ASSAY
74 results
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total RNA-seq
ATAC-seq
ChIP-seq
MeRIP-seq
Capture-C
CRISPR genome editing followed by sgRNA sequencing
DNase-seq
Hi-C
cell line
EndoC_BH1
33
19
13
3
2
1
1
glomerular visceral epithelial cell
1
1
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