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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
393
ChIP-seq
113
total RNA-seq
29
ATAC-seq
6
MeRIP-seq
6
pCHi-C
5
STARR-seq
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
DNase-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
MPRA
1
WGBS
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
393
DNA binding
Target of assay
361
transcription factor
recombinant protein
80
control
65
RNA binding protein
38
histone
38
histone modification
30
chromatin remodeller
19
broad histone mark
19
narrow histone mark
other context
2
other post-translational modification
Date released
247
November, 2017
44
November, 2018
27
December, 2018
18
August, 2021
18
January, 2019
16
October, 2019
13
November, 2019
8
February, 2021
1
March, 2020
1
May, 2021
Available data
374
bam
336
fastq
321
bigWig
302
bed narrowPeak
270
bigBed narrowPeak
57
bed broadPeak
57
bigBed broadPeak
20
tagAlign
3
tar
Organism
393
Homo sapiens
Biosample type
904
tissue
393
cell line
279
primary cell
198
in vitro differentiated cells
3
stem cell
Organ
294
liver
60
blood
60
bodily fluid
28
pancreas
15
epithelium
6
artery
6
blood vessel
6
heart
6
vasculature
3
kidney
Project
391
AMP
2
T1D
Genome assembly (visualization)
320
hg19
256
GRCh38
Lab
375
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
18
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
8
inconsistent control run_type
target.investigated_as!
other context
recombinant protein
BIOSAMPLE
ASSAY
393 results
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ChIP-seq
cell line
HepG2
294
GM12878
60
EndoC_BH1
15
Panc1
13
smooth muscle cell of the coronary artery
6
iPSC derived cell line
2
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
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