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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
total RNA-seq
6
DNase-seq
4
single cell RNA-seq
2
ATAC-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
small RNA-seq
Assay category
12
DNA binding
8
DNA accessibility
5
Transcription
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
17
June, 2019
3
July, 2019
2
April, 2018
2
February, 2021
2
July, 2018
2
November, 2020
Available data
26
bam
22
bigWig
17
bed narrowPeak
15
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
5
tsv
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
28
Homo sapiens
Biosample type
92
tissue
88
in vitro differentiated cells
28
primary cell
1
stem cell
Organ
313
epithelium
265
pancreas
35
vasculature
30
kidney
29
blood vessel
28
connective tissue
22
vein
21
brain
13
musculature of body
9
heart
9
liver
5
eye
1
adipose tissue
Project
28
AMP
Genome assembly (visualization)
24
hg19
22
GRCh38
Lab
28
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
13
inconsistent ontology term
target.investigated_as!
other context
assay_title!
total RNA-seq
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
28 results
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Clear Filters
ChIP-seq
DNase-seq
single cell RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
primary cell
cardiac fibroblast
5
3
1
mesenchymal stem cell
7
osteoblast
1
2
1
pancreatic stellate cell
4
brain pericyte
1
1
hepatic stellate cell
1
mesenchymal stem cell of adipose
1
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