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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
6
total RNA-seq
2
DNase-seq
Assay category
15
DNA binding
6
Transcription
2
DNA accessibility
Target of assay
10
histone
10
histone modification
5
broad histone mark
5
narrow histone mark
3
control
2
RNA binding protein
2
transcription factor
Date released
11
October, 2019
5
May, 2019
4
July, 2019
3
June, 2019
Available data
31
bam
28
bigWig
22
bed narrowPeak
16
bigBed narrowPeak
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
tsv
3
bed bedMethyl
bigBed bedMethyl
Organism
23
Homo sapiens
Biosample type
230
tissue
23
primary cell
19
cell line
Organ
379
epithelium
346
pancreas
30
connective tissue
28
vasculature
25
blood vessel
23
kidney
20
vein
12
brain
12
musculature of body
9
heart
8
blood
8
bodily fluid
7
liver
3
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
23
AMP
Genome assembly (visualization)
18
GRCh38
18
hg19
Lab
23
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
target.investigated_as!
other context
files.file_type!
bigBed bedMethyl
bed bed3+
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
total RNA-seq
DNase-seq
primary cell
epithelial cell of proximal tubule
10
1
kidney epithelial cell
5
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
glomerular endothelial cell
1
renal cortical epithelial cell
1
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