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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
1
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
17
DNA binding
2
DNA accessibility
Target of assay
8
control
6
histone
6
histone modification
6
transcription factor
4
broad histone mark
other context
3
other post-translational modification
2
narrow histone mark
Date released
7
December, 2018
7
January, 2019
4
November, 2018
1
March, 2020
1
October, 2017
Available data
21
bam
21
fastq
13
bigWig
11
bed narrowPeak
10
bigBed narrowPeak
2
bed bedMethyl
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
20
Homo sapiens
Biosample type
20
tissue
Organ
940
pancreas
786
liver
681
connective tissue
518
epithelium
489
adipose tissue
350
kidney
345
heart
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
22
vein
20
lung
20
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
20
AMP
Genome assembly (visualization)
11
GRCh38
11
hg19
Lab
20
AMP-T2D consortium
target.investigated_as!
other context
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
20 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
spleen
17
1
1
1
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