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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
64
ATAC-seq
4
Hi-C
Assay category
64
DNA accessibility
4
3D chromatin structure
Date released
64
August, 2021
3
July, 2019
1
October, 2019
Available data
2794
bam
2594
bigWig
1737
bed narrowPeak
1252
fastq
1122
tsv
1009
bigBed narrowPeak
376
tagAlign
311
bed broadPeak
275
bigBed broadPeak
246
bed bed3+
161
txt
153
zippedFastqFolder
64
xls
33
bed bedMethyl
33
bigBed bedMethyl
23
hic
22
bedpe bed3+
8
csv
6
bed bed3
4
hdf5
4
tar
3
bed bedgraph
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
68
Homo sapiens
Biosample type
64
tissue
3
primary cell
1
cell line
Organ
64
kidney
3
brain
2
blood vessel
2
epithelium
2
vasculature
connective tissue
1
liver
1
pancreas
Project
68
AMP
Genome assembly (visualization)
65
GRCh38
4
hg19
Lab
64
Katalin Susztak, Upenn
4
AMP-T2D consortium
Audit category:
1
inconsistent assembly
target.investigated_as!
other context
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
68 results
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ATAC-seq
Hi-C
tissue
kidney
64
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
endothelial cell of hepatic sinusoid
1
cell line
Panc1
1
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