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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
1
FAIRE-seq
Assay category
4
3D chromatin structure
1
DNA accessibility
Date released
3
October, 2022
1
March, 2020
1
October, 2019
Available data
613
bigWig
609
bam
409
fastq
295
bed narrowPeak
270
tsv
153
zippedFastqFolder
109
bigBed narrowPeak
100
tagAlign
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
2
csv
1
bed bed3
1
tar
Organism
5
Homo sapiens
Biosample type
10
tissue
7
in vitro differentiated cells
5
cell line
5
primary cell
Organ
5
epithelium
3
pancreas
2
blood vessel
2
vasculature
2
vein
Project
3
HPAP
2
AMP
Genome assembly (visualization)
5
hg19
Lab
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
3
audit script error
target.investigated_as!
other context
BIOSAMPLE
ASSAY
5 results
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Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
1
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
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