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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
142
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
142
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
87
histone modification
86
histone
44
broad histone mark
41
narrow histone mark
31
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
572
February, 2021
380
November, 2017
283
May, 2020
277
May, 2021
250
October, 2019
243
August, 2017
218
June, 2019
164
July, 2018
120
May, 2019
93
December, 2017
82
July, 2019
81
November, 2018
79
April, 2019
76
October, 2018
59
November, 2019
49
April, 2018
49
August, 2021
40
September, 2018
39
February, 2018
34
December, 2018
30
January, 2019
24
May, 2022
16
March, 2020
12
October, 2017
11
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
248
fastq
243
bam
233
bigWig
141
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
19
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
236
Homo sapiens
Biosample type
148
tissue
49
in vitro differentiated cells
46
primary cell
Organ
146
pancreas
54
connective tissue
29
epithelium
26
liver
5
adipose tissue
Project
243
AMP
Genome assembly (visualization)
213
hg19
210
GRCh38
Lab
243
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
other context
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
243 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
12
89
1
1
liver
25
pancreas
14
adipose tissue
2
2
right lobe of liver
1
+ See 1 more…
in vitro differentiated cells
adipocyte
48
1
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic acinar cell
1
See all biosamples
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