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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
207
ChIP-seq
89
total RNA-seq
9
WGBS
6
RRBS
5
ATAC-seq
5
DNase-seq
1
FAIRE-seq
Assay category
207
DNA binding
89
Transcription
15
DNA methylation
11
DNA accessibility
Target of assay
183
histone modification
182
histone
104
broad histone mark
77
narrow histone mark
control
24
transcription factor
7
RNA binding protein
3
chromatin remodeller
Date released
712
February, 2021
390
May, 2021
323
November, 2017
322
August, 2017
318
May, 2020
307
August, 2021
275
October, 2019
210
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
105
July, 2019
97
May, 2019
76
November, 2018
72
December, 2017
66
April, 2019
64
March, 2020
59
November, 2019
59
September, 2020
49
April, 2018
47
October, 2018
47
September, 2023
41
September, 2018
40
May, 2024
31
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
19
April, 2020
16
January, 2021
16
October, 2017
15
May, 2023
11
November, 2020
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
232
bigWig
217
fastq
212
bam
141
bed narrowPeak
89
tsv
74
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
17
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
316
Homo sapiens
Biosample type
233
tissue
55
in vitro differentiated cells
34
primary cell
Organ
145
pancreas
94
connective tissue
43
liver
39
adipose tissue
23
musculature of body
17
epithelium
Project
322
AMP
Genome assembly (visualization)
234
hg19
208
GRCh38
Lab
322
AMP-T2D consortium
Audit category:
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
other context
control
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
322 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
25
89
1
1
liver
37
3
1
subcutaneous abdominal adipose tissue
31
3
skeletal muscle tissue
19
4
pancreas
12
+ See 3 more…
in vitro differentiated cells
adipocyte
54
1
primary cell
skeletal muscle myoblast
14
1
2
pancreatic alpha cell
7
1
pancreatic beta cell
7
1
pancreatic acinar cell
1
See all biosamples
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