Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
148
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
148
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
91
histone modification
90
histone
46
narrow histone mark
43
broad histone mark
29
control
28
transcription factor
6
RNA binding protein
3
chromatin remodeller
Date released
571
February, 2021
390
November, 2017
283
May, 2020
277
May, 2021
249
August, 2017
243
October, 2019
164
July, 2018
120
May, 2019
82
July, 2019
79
April, 2019
79
December, 2017
76
October, 2018
75
November, 2018
72
September, 2018
59
November, 2019
49
April, 2018
46
August, 2021
39
February, 2018
34
December, 2018
31
June, 2019
30
January, 2019
24
May, 2022
16
March, 2020
15
October, 2017
9
September, 2017
5
December, 2019
5
November, 2020
3
August, 2018
3
June, 2018
1
March, 2019
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
242
Homo sapiens
Biosample type
144
tissue
58
primary cell
47
in vitro differentiated cells
Organ
149
pancreas
60
connective tissue
29
epithelium
23
liver
13
adipose tissue
Project
249
AMP
Genome assembly (visualization)
219
hg19
216
GRCh38
Lab
249
AMP-T2D consortium
Audit category:
25
missing controlled_by
Audit category:
12
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
target.investigated_as!
other context
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
249 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
3
89
1
1
liver
22
pancreas
14
white adipose tissue
8
adipose tissue
2
2
+ See 2 more…
primary cell
skeletal muscle myoblast
15
2
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
pancreatic acinar cell
1
in vitro differentiated cells
adipocyte
46
1
See all biosamples
Download