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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
27
ChIP-seq
10
total RNA-seq
4
Capture-C
3
STARR-seq
2
ATAC-seq
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
108
Transcription
27
DNA binding
2
3D chromatin structure
2
DNA accessibility
1
DNA sequencing
Target of assay
12
control
11
transcription factor
4
histone
4
histone modification
2
broad histone mark
2
narrow histone mark
1
RNA binding protein
Date released
200
May, 2022
170
February, 2023
162
August, 2017
148
August, 2021
139
February, 2021
134
May, 2020
126
November, 2017
123
May, 2021
99
October, 2019
56
September, 2020
46
March, 2020
29
October, 2018
25
February, 2020
24
July, 2019
23
May, 2019
19
April, 2020
17
December, 2017
16
January, 2021
11
April, 2019
10
November, 2020
9
November, 2018
9
October, 2017
8
February, 2018
8
January, 2018
7
June, 2019
5
December, 2018
4
January, 2019
4
July, 2018
4
March, 2023
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
2
December, 2019
1
August, 2018
1
August, 2022
1
September, 2018
Available data
108
tsv
16
bed narrowPeak
16
bigWig
8
bam
8
tagAlign
2
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
147
Homo sapiens
Biosample type
101
tissue
34
cell line
12
in vitro differentiated cells
1
primary cell
Organ
92
heart
kidney
32
liver
6
blood vessel
6
vasculature
5
connective tissue
4
pancreas
3
epithelium
2
artery
1
adipose tissue
Project
148
AMP
Genome assembly (visualization)
59
hg19
GRCh38
Lab
110
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
target.investigated_as!
other context
assembly!
GRCh38
organ_slims!
kidney
BIOSAMPLE
ASSAY
148 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
Capture-C
STARR-seq
ATAC-seq
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
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cell line
HepG2
18
9
2
1
1
EndoC_BH1
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
1
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