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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
total RNA-seq
15
RRBS
15
small RNA-seq
12
WGBS
8
Hi-C
3
single cell RNA-seq
1
ATAC-seq
Assay category
53
Transcription
27
DNA methylation
8
3D chromatin structure
1
DNA accessibility
Target of assay
3
control
Date released
314
May, 2020
306
February, 2021
266
May, 2021
215
August, 2017
212
August, 2021
168
July, 2018
162
May, 2022
140
February, 2023
124
October, 2019
93
November, 2017
89
July, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
27
September, 2018
24
November, 2019
23
February, 2018
23
February, 2020
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
15
November, 2018
14
May, 2023
14
November, 2020
13
October, 2018
11
October, 2017
10
December, 2019
9
January, 2019
8
June, 2019
7
August, 2020
7
January, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
73
bigWig
70
bam
53
tsv
23
bed bedMethyl
23
bigBed bedMethyl
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
89
Homo sapiens
Biosample type
60
tissue
29
primary cell
Organ
21
heart
18
connective tissue
17
brain
13
epithelium
adipose tissue
10
kidney
10
liver
10
musculature of body
10
vasculature
9
blood vessel
6
pancreas
5
limb
2
artery
2
pericardium
1
eye
Project
89
AMP
Genome assembly (visualization)
72
hg19
62
GRCh38
Lab
89
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
target.investigated_as!
other context
organ_slims!
adipose tissue
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
89 results
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total RNA-seq
RRBS
small RNA-seq
WGBS
Hi-C
single cell RNA-seq
ATAC-seq
tissue
heart left ventricle
2
1
4
right lobe of liver
2
2
1
body of pancreas
2
2
gastrocnemius medialis
4
heart
2
1
1
+ See 23 more…
primary cell
cerebellar granule cell
2
epithelial cell of proximal tubule
1
1
kidney epithelial cell
1
1
renal cortical epithelial cell
1
1
skeletal muscle satellite cell
1
1
+ See 19 more…
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