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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
965
total RNA-seq
831
ChIP-seq
222
ATAC-seq
173
DNase-seq
161
single cell RNA-seq
27
snATAC-seq
25
WGBS
24
pCHi-C
16
small RNA-seq
15
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
3
snDrop-seq
Assay category
1142
Transcription
831
DNA binding
426
DNA accessibility
36
DNA methylation
15
3D chromatin structure
Target of assay
574
histone modification
573
histone
306
narrow histone mark
267
broad histone mark
171
control
91
transcription factor
25
RNA binding protein
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
456
February, 2021
284
August, 2017
216
October, 2019
193
May, 2020
166
August, 2021
160
June, 2019
120
July, 2018
82
November, 2017
80
April, 2019
74
October, 2018
70
July, 2019
65
May, 2019
59
May, 2022
56
February, 2023
48
December, 2017
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
23
November, 2018
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1817
bam
1699
bigWig
1062
tsv
881
bed narrowPeak
496
bigBed narrowPeak
374
fastq
238
tagAlign
208
bed broadPeak
200
bed bed3+
171
bigBed broadPeak
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
6
csv
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
2475
Homo sapiens
Biosample type
2484
tissue
1057
primary cell
593
cell line
391
in vitro differentiated cells
10
stem cell
Organ
547
connective tissue
499
pancreas
488
adipose tissue
361
liver
313
heart
265
brain
237
kidney
blood vessel
133
vasculature
122
limb
81
musculature of body
73
artery
70
bone element
56
eye
43
nerve
22
spleen
20
lung
18
ureter
15
epithelium
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2387
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1751
GRCh38
1681
hg19
Lab
2195
AMP-T2D consortium
85
Katalin Susztak, Upenn
47
KPMP
46
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
7
inconsistent ontology term
3
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
target.investigated_as!
other context
organ_slims!
blood vessel
files.file_type!
txt
BIOSAMPLE
ASSAY
2484 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
snDrop-seq
tissue
islet of Langerhans
286
71
68
1
6
7
4
3
1
1
4
adipose tissue
382
2
3
3
1
liver
167
145
20
2
1
3
1
1
1
1
kidney
27
75
13
51
6
1
1
1
heart left ventricle
3
35
2
3
18
4
1
1
1
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